rs213393887 SNP Detail

Summary

• ID
  rs213393887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58322964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCTCCTG CGCCCTGCGC
  TCCACCCCCA GCCGGGCCTG CTGACCGCGC CGAGCGCCGG GCTGGACTGA CCGCGGAGGC
  TGAGCTGTTG GAGCAGCCGG CCCGCCCCTG GACCACGCTC GGGCCGTCGC TGAGGAGTTG
  AATTGAGGCA CCCCTGCCGC GGGAGGTGAG GAGGGAGGAG GAGGATGTCG CGCCGAGACG
  Y
  CGGCGCCCAG AGCAGCCCGT GACTTGGCGG CGTGGGCCGT AGACCCAGGC GCGAACTCGG
  ACTTTGTCTT TGGGGGCCCG TGCTCGGCCC TTCTCGGTTT CCGGTGGGGT CCCAGAGGAG
  CCTCTGCCCT CCAGCCTCTT CCACCATGTC CAAGATGCCG GCCAAGAAGA AGAGCTGCTT
  CCAGATCACC AGTGTCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358098070	MGP_WTSI_3_58219465	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213393887					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358098070	MGP_WTSI_3_58219465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58322964 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13200	CpG island 13200			within coordinates
Gm65073	predicted gene, 65073			889 bp downstream
Rr577221	regulatory region 577221			813 bp distal
Rr577222	regulatory region 577222			417 bp distal
Rr577223	regulatory region 577223			798 bp proximal
Rr577224	regulatory region 577224			1486 bp proximal
Tsc22d2	TSC22 domain family, member 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29198	transcription start site region 29198			804 bp downstream
Tssr29199	transcription start site region 29199			772 bp downstream
Tssr29200	transcription start site region 29200			749 bp downstream
Tssr29201	transcription start site region 29201			714 bp downstream
Tssr29202	transcription start site region 29202			219 bp downstream