rs213372234 SNP Detail

Summary

• ID
  rs213372234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132291583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCTGGC TGGCTCAGTC
  CGTGTGGAGG TTCCTGTGGC ATCTGGTGGA GGGGCCCTGG GTCACTGTGT TTCCTCCCAG
  GGGTGACTTG GCAGTGCTTT GCTCTGTTTC CTCACTTCTG CAATTGCCAG GCCACAACAC
  AGAGGCTCGA GCTGAGGCTT GGACCAGGAG GGAGCAGAGC CTACGGCTGA GCTCCTCCTA
  Y
  AGGTAAGGAG GGTCCCAGCC CTGGCTGGGC AAAGGAGAAC CCTACACAGG TCTCCTCAGG
  AGGCCAGAGT CATGCCTCCA GGTCATACTA AGGTAGATGG GTGGCTGGAT TTTAAAAGAA
  CCATCTGGCA TCTTTCTCAG GCCAGGCTTA ATATTCAAGA AGAGCTTTAT GGCTGTGCGA
  CAGGCCAAAG CCAGGGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363296953	MGP_WTSI_4_132120187	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213372234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363296953	MGP_WTSI_4_132120187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132291583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptafr	platelet-activating factor receptor			mRNA-UTR
				Splice-Site
Rr601015	regulatory region 601015			195 bp distal
Rr601016	regulatory region 601016			within coordinates
Rr601017	regulatory region 601017			147 bp distal
Rr601018	regulatory region 601018			within coordinates
Rr601019	regulatory region 601019			1219 bp proximal
Tssr39381	transcription start site region 39381			791 bp downstream
Tssr39382	transcription start site region 39382			762 bp downstream
Tssr39383	transcription start site region 39383			679 bp downstream
Tssr39384	transcription start site region 39384			644 bp downstream
Tssr39385	transcription start site region 39385			535 bp downstream
Tssr39386	transcription start site region 39386			196 bp downstream
Tssr39387	transcription start site region 39387			179 bp downstream
Tssr39388	transcription start site region 39388			62 bp downstream
Tssr39389	transcription start site region 39389			1088 bp upstream