rs213364840 SNP Detail

Summary

• ID
  rs213364840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71519475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGACATT CTCTATAACA
  GTGACTTAGA TTTATCCTGT AAATTTAATG GAACGTAGAA GGGCTGAAGA CAATGTGGTC
  ATCCCCTATG TGGGTCTTTC CAACTGAGCT TTTAACCAGA GTTGGGACTT GTTGTCTTGG
  GCTTCTCTTT GAGGCTACTG CTTGTGCTGG GGAGATTCTT CTGACCCTCC CTTTGTTGTG
  Y
  TCGAGTACCC CGATATGAGA ATACCTCTTA TCTATAGTGT CTTTATGATC AGACTTTCTA
  AATTAAAAGA GGCAAGTTTG CTAAAAGCAA GGAGAATTAG TTGTTGGAGT GGTAGGAGGA
  AAGGGCTGGC TTGGTAGCAA ATAAACAAAT ACTCTGAAAA CAAACAAAAG TAAACAAACC
  CTCCCTCTGC ATGAGAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368727526	MGP_WTSI_6_71492485	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213364840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368727526	MGP_WTSI_6_71492485	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71519475 () rs orientation: forward

Symbol	Name	Function Class
1700040L08Rik	RIKEN cDNA 1700040L08 gene	701 bp downstream
Chmp3	charged multivesicular body protein 3	1345 bp upstream
Cpgi17526	CpG island 17526	1251 bp proximal
Gm44194	predicted gene, 44194	753 bp upstream
Rr399696	regulatory region 399696	1176 bp upstream
Rr631970	regulatory region 631970	867 bp proximal
Rr631971	regulatory region 631971	1613 bp proximal
Tssr57031	transcription start site region 57031	1352 bp upstream
Tssr57032	transcription start site region 57032	1380 bp upstream
Tssr57033	transcription start site region 57033	1409 bp upstream
Tssr57034	transcription start site region 57034	1484 bp upstream
Tssr57035	transcription start site region 57035	1851 bp upstream