rs213345084 SNP Detail

Summary

• ID
  rs213345084
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118408039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAAAGG AGGCTGGAGA
  GAAGGTCCAG TGGTCAAGAG TAGAAGAGGA CCCAGTTTCT ATTCCTAGTG CCTATGTCAG
  GTGGCTAAAA ACTGTCTGGG ACTTAGCTCC AGGGCCTCCA GGGCCTCTAA CCTCCGTGGG
  AACCTGCACT TGTACACACA CACACAACTA AAAATAATGA ATAATGTCTT TTTTTTTTCT
  A
  AAAAAAAAAA AACCTTTTTA GTGTAAACTT TTGCTTAAAC AATAGTCCCA ATCCCAGGCC
  AATTTCAGGG CAAACACCTA ACCTGCTACT CCTAGGGACC CCACTTCCCA TATAGCAGGA
  GCTGTCTTCC CAGTGGAGGG TACCCCTGGC TAACGCCAGG AAGCCAGTGC AAATCTCCCC
  TGAATTTGTG TCCATAAAAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
ss366427348	MGP_WTSI_5_118719983	EVA_MGPV3	EVA_MGPV3	r	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
rs213345084					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366427348	MGP_WTSI_5_118719983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118408039 () rs orientation: forward

Symbol	Name	Function Class
Gm73266	predicted gene, 73266	within coordinates
Rr618848	regulatory region 618848	710 bp distal
Rr618849	regulatory region 618849	759 bp distal
Rr618850	regulatory region 618850	250 bp distal