rs213301352 SNP Detail

Summary

• ID
  rs213301352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167030842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGCTGTG GTGCAGGGGT
  GCGCGAGGGC GGGCGTCGCG GCTACCGTCT CACCTCCATC CCGACGGCTG CGAGGCAGAA
  AGCGAAAGCG GACACGGGTC AGCGAACCGT ACTGTGAGGC CCCTCCCCCA GGGTCCCCTA
  CCGGCCTTGA CCTTCCCAAG GCTTAAGCGG CTCAGGGGAG TTGGGGGGCG GGGGGGGGGG
  R
  AGGGAGGACG GATGGCTGCT GTTCCTCCCG CCGGTGCTGA AGTCAGCCCC ACCCCAGGAC
  GAAGGGAGGG GTGGCCCTCC AGGCGGGAGA GGCCCCCAGG AGGCTCCCAG GAAGCCCCAC
  CCCCGCCCTG GCGCAATCCG GCCGCCCGGG GCGCTGTCCG TCCCGTCGAG TGCTGAAACT
  CCCTGCTCTC GGGCTGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356500169	MGP_WTSI_2_167014422	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213301352					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356500169	MGP_WTSI_2_167014422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167030842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			within coordinates
Cpgi12734	CpG island 12734			within coordinates
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			Intron
				Noncoding-Transcript-Variant
Rr570485	regulatory region 570485			707 bp distal
Rr570486	regulatory region 570486			210 bp distal
Rr570487	regulatory region 570487			within coordinates
Rr570488	regulatory region 570488			714 bp proximal
Rr570489	regulatory region 570489			1223 bp proximal
Rr570490	regulatory region 570490			1531 bp proximal
Tssr21792	transcription start site region 21792			738 bp upstream
Tssr21793	transcription start site region 21793			757 bp upstream
Tssr27748	transcription start site region 27748			285 bp upstream
Tssr27749	transcription start site region 27749			149 bp upstream
Tssr27750	transcription start site region 27750			107 bp upstream
Tssr27751	transcription start site region 27751			86 bp upstream
Tssr27752	transcription start site region 27752			1165 bp downstream
Tssr27753	transcription start site region 27753			1202 bp downstream
Tssr27754	transcription start site region 27754			1365 bp downstream