CAATAACTGG TGATTTGCAC AAGCAGAGTT AAAAAACGTA CGTTAACAAA GGAAAACTTC AAATCCAGAT CTCTAAACCT GAGGTTCATG GGTGAGCTAA AAACCATGTG ACATTTTGAA ACATGACTTC CCAGCCTTGG CCCTACTCAC ACTTCAAGCT AGATGATTCT GGGTGTGCCC TGTGTAGTTA CAGAGCAGAC Y CCTGGCTTTA TGGACTGGCT GCCAGTAGGG CCTTCCCAGT CTATGGGTCA TGCTTACCCC AAATATCTCC AGACTCTGCC AAATGTCTCC CAGGAACTAT TCTTTCCTCT TCTCAAGACT ATTGTGATAA ACTTAATGTG TATTACATCG CTTTCCTGGG AGGCTCATTA CCTGTATCCT ATTCCTACAA AGGAAAGGCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss320766600 | CHEV_3_52844226 | CHEVERUD | SCREENING_POP | f | SNP | T | C |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
||||
rs213280361 | SNP | T | C |
Location: Chr3:52947725 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13160 | CpG island 13160 | 784 bp proximal | ||||||
Gm42901 | predicted gene 42901 | within coordinates | ||||||
Lhfpl6 | LHFPL tetraspan subfamily member 6 | 1243 bp upstream | ||||||
Rr576626 | regulatory region 576626 | 331 bp proximal | ||||||
Rr576627 | regulatory region 576627 | 1135 bp proximal | ||||||
Rr576628 | regulatory region 576628 | 1290 bp proximal | ||||||
Rr576629 | regulatory region 576629 | 1834 bp proximal | ||||||
Rr576630 | regulatory region 576630 | 1849 bp proximal | ||||||
Tssr29102 | transcription start site region 29102 | 1213 bp upstream | ||||||
Tssr29103 | transcription start site region 29103 | 1326 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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