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rs213280361 SNP Detail
Summary
  • ID
    rs213280361
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:52947725 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAATAACTGG TGATTTGCAC
    AAGCAGAGTT AAAAAACGTA CGTTAACAAA GGAAAACTTC AAATCCAGAT CTCTAAACCT
    GAGGTTCATG GGTGAGCTAA AAACCATGTG ACATTTTGAA ACATGACTTC CCAGCCTTGG
    CCCTACTCAC ACTTCAAGCT AGATGATTCT GGGTGTGCCC TGTGTAGTTA CAGAGCAGAC
    Y
    CCTGGCTTTA TGGACTGGCT GCCAGTAGGG CCTTCCCAGT CTATGGGTCA TGCTTACCCC
    AAATATCTCC AGACTCTGCC AAATGTCTCC CAGGAACTAT TCTTTCCTCT TCTCAAGACT
    ATTGTGATAA ACTTAATGTG TATTACATCG CTTTCCTGGG AGGCTCATTA CCTGTATCCT
    ATTCCTACAA AGGAAAGGCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320766600 CHEV_3_52844226 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs213280361 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:52947725 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13160 CpG island 13160 784 bp proximal
Gm42901 predicted gene 42901 within coordinates
Lhfpl6 LHFPL tetraspan subfamily member 6 1243 bp upstream
Rr576626 regulatory region 576626 331 bp proximal
Rr576627 regulatory region 576627 1135 bp proximal
Rr576628 regulatory region 576628 1290 bp proximal
Rr576629 regulatory region 576629 1834 bp proximal
Rr576630 regulatory region 576630 1849 bp proximal
Tssr29102 transcription start site region 29102 1213 bp upstream
Tssr29103 transcription start site region 29103 1326 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory