rs213255557 SNP Detail

Summary

• ID
  rs213255557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118456433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCGCCTGCC TCCCGCTGAT Gtcccctcct
  ctcccctccc cttccctccc ctcccctccc ctccTCAgcc cgcccagcgc gctcctcccg
  ccgccgcccc acaggatcgc gtgctcgctc gcccgcccgc ccgccGCAAT CGGAGAACCC
  Y
  TCAAATCGGG GGATGCCGCG GGGCTCGGTG TCCCCCGCAA GACGAAGGAC AAAAGTTCCT
  CAGCTGACAG GCGAGGGCTC TGCCCATGCG CCTAACGGCC CTCCTTTCTG GACTACGCTT
  TCCAGAAGCC TCCGCGATGA CTCCGTGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924625	CHEV_6_118429490	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213255557					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118456433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	within coordinates
Rr637483	regulatory region 637483	1151 bp distal
Rr637484	regulatory region 637484	163 bp distal
Rr637485	regulatory region 637485	within coordinates
Rr637486	regulatory region 637486	1037 bp proximal
Rr637487	regulatory region 637487	1198 bp proximal
Tssr62662	transcription start site region 62662	154 bp upstream
Zfp9	zinc finger protein 9	mRNA-UTR