rs213248191 SNP Detail

Summary

• ID
  rs213248191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGACATG GGTGACATTT
  CCCACAGCTA GGTGCAAGAG AATGAGAAGC TAGACAGTAT TCTGAACAGC ACAGCTGCAC
  CTGTGTCTCA AACAACAACA AAAAGTCACA AGTGAAACTT TCAGATCTAC TTTTTTAGGT
  TGTTTTTTTT TTTTTTTTTT TGAGACAGGA TCTTACACTG TACCTAGCTG AAACTGGCAC
  R
  GGATTGACTG TGTAGCCCAG ACTGGTCTCA AGCCACGTCA GTCCTCCTGC CTCAGCTTCC
  ATTGGGGGTT CTTGCTATAA GCTAAATGTG GACCCCATCA GACTTTTACA GCTTGTGGTC
  TATCTCAGTC AAGGATGAAG CTCTGGTTTG CATGGTATTA GTGTAGCCAT GTTGGATCCT
  GCAAGGGTCA TCCCATCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100050	CHEV_4_44086924	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213248191					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	985 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1285 bp distal
Rr591150	regulatory region 591150	788 bp distal
Rr591151	regulatory region 591151	1055 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1495 bp upstream
Tssr41483	transcription start site region 41483	1359 bp upstream
Tssr41484	transcription start site region 41484	1321 bp upstream
Tssr41485	transcription start site region 41485	1031 bp upstream