rs213222472 SNP Detail

Summary

• ID
  rs213222472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153363561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCTCA CCCGCATGGA
  AGCAGCGGCG AAATGGCTCC GACTGCAGGA CCCAGGGGGC GGAGTCGGCG ACTCGCGCCT
  GCGCGGTAGG CCAACTCCGG AGCCAGCACG CCCCGAGGGG GCGGGGCTTG AACCACTTCC
  GGGCGCCAAA CCTGAGGTCG CGCGAGATCT GCTGGCCTAG GCCCATAATT TCCTGTCAGT
  Y
  GCTAACCAGC TTGGTTTCTG GAAGTTATGT CTCCTTGCCT TTGTCTTTGT AGAGCAAGCT
  AGCCCACCAC TTAACGCAGT CCACTTGCCT CCACCTCTGA AGGCAAAATT TAGAGACATG
  CCACCATGGA TCTCCTTTTT GATAGTTTAT CTTACGTAAG GGCAGTGTTA CAGGATTAAT
  CCTTTCAGAG TTTATCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351973733	MGP_WTSI_1_155334945	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213222472					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351973733	MGP_WTSI_1_155334945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153363561 () rs orientation: forward

Symbol	Name	Function Class
Dhx9	DExH-box helicase 9	155 bp upstream
Rr396394	regulatory region 396394	within coordinates
Rr396395	regulatory region 396395	1283 bp upstream
Rr420682	regulatory region 420682	218 bp distal
Rr420683	regulatory region 420683	1562 bp distal
Rr420684	regulatory region 420684	280 bp distal
Rr420685	regulatory region 420685	within coordinates
Rr420686	regulatory region 420686	1105 bp proximal
Tssr9459	transcription start site region 9459	894 bp downstream
Tssr9460	transcription start site region 9460	within coordinates
Tssr14270	transcription start site region 14270	153 bp upstream
Tssr14271	transcription start site region 14271	134 bp upstream
Tssr14272	transcription start site region 14272	125 bp upstream