rs213222213 SNP Detail

Summary

• ID
  rs213222213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101205363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCAGCA ACGGACGACT
  GGGTGGCTCT CTGAAGACAT GAGAACATTC AAAGCCCTGA CAAAGTCTGT GACCTGGACC
  TAGCCGTCCA TTTCAACATT CGCTTGAAAC ACTTGAAAGA AGTCTCAGGG GACTTTGAAG
  TCATTCTCCC AATGGAAGGG TTGGAAGCTG ATAGTCATCA CACCCCAAGG TAGGAGGGAT
  R
  CTTGGCTTCC TTGGGCCCCT GTTCTAGCAG GAGAGAAGGA ACATAGGATC CGGTACAAGG
  AAGGGCAAAG GCTAGCACAG AACTTCCACA AGAGCTACTC AGTCTAACAA AAGCCAGCTT
  TATGCACTTT CTAGAATAAC TTCACATCTG ACACCTAGCC CATGCAAGAG AAGGACCGGG
  AAGAGCTGGT CTTCATTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320851738	CHEV_3_101101970	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213222213					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101205363 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	1439 bp upstream
Gm65445	predicted gene, 65445	within coordinates
Rr582001	regulatory region 582001	1270 bp distal
Rr582002	regulatory region 582002	551 bp distal
Rr582003	regulatory region 582003	1976 bp proximal
Tssr30898	transcription start site region 30898	541 bp downstream
Tssr30899	transcription start site region 30899	511 bp downstream
Tssr34786	transcription start site region 34786	1481 bp upstream