rs213220223 SNP Detail

Summary

• ID
  rs213220223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141978946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTATATT TGGTAAGACA
  GTAATATTTT TATACACATA TTTGCATCTA GTGATTTAAG TTTACCTAAT CTGGTGATCA
  TAACTTACTA GGAATGTAGA AAAACCATTA CATAGCAAAT TAGGTCACCT ACAAAAACAC
  AGGTATATAT TTTTAAACTA TTACTATTAA ATTTACAAAG GTTTAAAAAT ACTCATCTAA
  Y
  CACTTATTAT TTATATATAA TATGAATCTT TCACAAATAA AATTTTAATA CATAAATATT
  GAGGCTGTAC GATGTAGCTC AGTGGTACGG CATATGCCTG GGATGTATGA CGCCCAGGGA
  CTCATCCCTA GCTCTTCAAA CAAACAAAAG TGAATTCAAT ATAGGTTTAA AAAAATCCCA
  ATTCTGATAA ATAACAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320999827	CHEV_3_141936149	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213220223					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141978946 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	1916 bp upstream
Rr586404	regulatory region 586404	1315 bp proximal
Rr586405	regulatory region 586405	1919 bp proximal