rs213218482 SNP Detail

Summary

• ID
  rs213218482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCCTGAG GTCTCGGCGT GGGGCCCAAG CGCCCGACGG
  TGCTACCCAC ACTGCTGTCC GCGGGTGCGC ACCGGCTTCG CTCTGGACAG TTGCGGGGTG
  Y
  CTAGGTGCTC CGCCTGAGCG AACTTGCTTG GGAATGCCCT GTAAAATGCA AATTAAAGCC
  GTGCCTAGGG GTTTCATAAC TCAAACAAGC CGTGCCCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320711452	CHEV_3_37540051	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213218482					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695278 () rs orientation: forward

Symbol	Name	Function Class
Gm42922	predicted gene 42922	Coding-Synonymous
Rr575523	regulatory region 575523	1039 bp distal
Rr575524	regulatory region 575524	within coordinates
Rr575525	regulatory region 575525	332 bp distal
Rr575526	regulatory region 575526	224 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28908	transcription start site region 28908	1436 bp downstream
Tssr28909	transcription start site region 28909	1217 bp downstream
Tssr28910	transcription start site region 28910	1186 bp downstream
Tssr28911	transcription start site region 28911	1165 bp downstream
Tssr28912	transcription start site region 28912	1143 bp downstream