rs213214503 SNP Detail

Summary

• ID
  rs213214503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115214875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACAGGAAA ATCTACTATT GAAGTAGACA
  TTGTAGGTGG AAGAAAATGA CCAGGTCCTG AGCACCCCAC ACCAGGTGCT GGCATGAGCA
  CCCTGGTCTG AGAGGTGCTT TCTGGAGGGG ATGAGAATTA CAGATGGGAG AAATGGTTTC
  Y
  GTTTGTCCAG AAGCTTAATA TCACTTTAGG TTTTCAGAAA TAAGTTCCAA GTTTTAGGAG
  AGAATAACAT TCTTACCTCA CCTTAGTCAC AAGACCCTGG ACCCCTAGGA GTCTAGAATC
  CGGGTCAGTG GCAGGAAAGA CCAGACTGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321915617	CHEV_6_115187932	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213214503					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115214875 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636939	regulatory region 636939			531 bp proximal
Syn2	synapsin II			Intron
				Noncoding-Transcript-Variant
Tssr58295	transcription start site region 58295			1053 bp upstream