rs213209402 SNP Detail

Summary

• ID
  rs213209402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5507930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGAGCTAG GTCCCAAGGA
  GCTGGTGTCC TGCTCTGCTC TCCATTTTCA CTTGGACCCA GTGTCTTCTG AGAGCTGCTG
  CTGGGGTACG GCAAGCTGAA ATTCCACAAC CTTCCAAGGC TTCTGCCTTT CCTCTGCTTA
  CTGACCATTG CCTACGTTTC CTAAGATCAT CACCAAACAA GGTATTCTTC TGTGTAGTCC
  Y
  GGCACTCACG GAATCCATGT AGAAGTCTCT TACTTAGAAA ACTCCAGTGC TTGTCCTAGC
  CTGCCCTTGG TTCATGTGCT GTGACAGCCT TTGGTAACCT TTCTGACTTT CCACACAGTC
  AAGCACTCAC AGCCAAGTCC TGGGTCATCT GGAAGACACG CATATTCTCT AGAGGAAATC
  GTTTTGTGGC TGTTTTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729343	CHEV_6_5457930	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213209402					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5507930 () rs orientation: forward

Symbol	Name	Function Class
Rr406959	regulatory region 406959	61 bp proximal
Rr626154	regulatory region 626154	within coordinates
Rr626155	regulatory region 626155	1302 bp proximal