rs213125637 SNP Detail

Summary

• ID
  rs213125637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:82224229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC TTTTGACCCT ATTCCCTGCC
  R
  TCATCTTCCT CATTGCCCTC CTTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034253	CHEV_15_82170458	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213125637					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82224229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Naga	N-acetyl galactosaminidase, alpha			1246 bp upstream
Pheta2	PH domain containing endocytic trafficking adaptor 2			Intron
				Noncoding-Transcript-Variant
Rr506479	regulatory region 506479			1059 bp distal
Rr506480	regulatory region 506480			661 bp distal
Rr506481	regulatory region 506481			903 bp distal
Rr506482	regulatory region 506482			340 bp proximal
Rr506483	regulatory region 506483			1162 bp proximal
Tssr4669	transcription start site region 4669			1153 bp upstream
Tssr132381	transcription start site region 132381			1171 bp upstream
Tssr135543	transcription start site region 135543			1237 bp upstream
Tssr135544	transcription start site region 135544			1174 bp upstream
Tssr135545	transcription start site region 135545			1164 bp upstream