rs213107116 SNP Detail

Summary

• ID
  rs213107116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132568275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCGTCAA CACTGAGGCT
  CTCCTACAGT TAGAGTTAGT TCATATTCAA ACAGAAACGT CATGAATTCA CTGTCAGAGC
  TTGCTCCTTC CTTCCTCCCG CACCCCCCCC CCTTTGATTT TTTTGAGACA GGGTTTCTCT
  GTAGCCCTGG CTGTCCTTGA ACTCACTCTG CAGACCAGGC TGGCCTGGAA CTCAGAAATC
  Y
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTAC GCCACCACTG CCTGGCTAGA
  GCTTCTTTCA GTGTTTAACA CTTTCTTCCC AAGTGATTCA ATTATTCAGA GATTTCAGTG
  GGTCTGTCTT TAGAGCACCC CCCACCCAAA CTCCTGCATT TTAATACTGG CTATGCCCTT
  CAGAAATAAC GCAGCTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336769	CHEV_4_132396879	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213107116					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132568275 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14975	CpG island 14975			1415 bp proximal
Ppp1r8	protein phosphatase 1, regulatory subunit 8			Intron
				Noncoding-Transcript-Variant
Rr601096	regulatory region 601096			1123 bp proximal
Tssr43718	transcription start site region 43718			1979 bp downstream