rs213099872 SNP Detail

Summary

• ID
  rs213099872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54536608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGACCAG GCTGGCCTCG
  AACTCAGAAA TCTGCCTGCC TCTGCTTCCC AAGTGCTGGG GTTAAAGGTG TGCGCCACCA
  CTGCCCGGCT CCATGCTTAC TATTCTTAGA GAAGATCAGA GATCTGAACC CAGCACCCAT
  GTTGGGCAGC TCACAACCAC CCTTAACTAC AATTCCAGGG GAAACCAATG CTTTCTTTTG
  R
  CCTCCCTGGC ACCCATTCAT GTATAACCCC ACACACATAT ACACATAATT AAAAATAAGA
  AAAATAAATA TTCTTAAGAG CATAGTATAA ATAATAACGT AGTCATTAAT CATTACCAAA
  TATTTTCTGG CATTGGGTAT AGTAATACAC ACCTCTAATT GCACCACTTG GAAGGCAGAG
  GCAGGCTGAG CTCTGAGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772242	CHEV_3_54433109	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213099872					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54536608 () rs orientation: forward

Symbol	Name	Function Class
Rr576819	regulatory region 576819	1161 bp proximal