rs213099476 SNP Detail

Summary

• ID
  rs213099476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19799996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCATCACT ATGGCCCCCA
  TTCTGTTGGT GAGAATACAC AGGCTAGCCC ACCTTCCTGG GAGGCTGGGT GATTTTACAA
  GGGAGGAAAC ACTAGGAAAT CAGGCTGTGG GGATTCCGTC TTGGAATTTG GTTTGCCACT
  AATTTGTAGG ACAGACCTCC AGTCAAAGTT AGCTGCTATT GTTATGCTGA ATGGAGGAGA
  Y
  GTGCCGAGCC TGAGGAAGAA TCCATGAAGG ATGGAAGAGG TGACCTTGAA CAAGTCAAAT
  AATCTCACAT CTTTGAGACA CCATTTTGTC CTCAGCAAAA TGTAAATATT TGGTCCCAAG
  AGGAAAAATG AGAAAAAAAA AATGTGCAAA CTTGAGTTTG TTTTGTGTAA GAGCAAACAT
  ACCCCTCTCC AGCTAGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390453433	MGP_WTSI_14_20569150	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213099476					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390453433	MGP_WTSI_14_20569150	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19799996 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	611 bp downstream
Nid2	nidogen 2	1337 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	159 bp proximal
Rr488150	regulatory region 488150	186 bp proximal
Rr488151	regulatory region 488151	1208 bp proximal
Tssr124369	transcription start site region 124369	975 bp upstream
Tssr124370	transcription start site region 124370	1009 bp upstream
Tssr124371	transcription start site region 124371	1033 bp upstream
Tssr124372	transcription start site region 124372	1348 bp upstream
Tssr127556	transcription start site region 127556	1196 bp downstream