rs213068047 SNP Detail

Summary

• ID
  rs213068047
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143913147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTTGTA TTAAAATACA
  TCATATGGGA AGATTTCCAT ACCTGTACAA GCCCCTTATT GTACATAAAA AAAAAAGGTC
  TTTATTTTCT TTTCCTTTAA AATGATTTAA AAAAAAACAA AAACAAAAAC CAGCACACAT
  ATCATACAGA ATCATGGTGA GTTGTGGTAT TTCCTAAAGT ATGAACATGA AAATGAATAT
  K
  TAATTCTAAA ATGAAATGTT GTAAATTAAG GGGGAATGTG CTCAGGTATC ACTAAATGAC
  TCTCTAAGGG TCTGGGTGGT CTTTGTGGAG GGAAGGAAAG GGGAAGGGTC GGAAAGATGG
  GACTTTGAAC TTTTGTCTCC AGGCTACCCC GGGGCCTAAA CTTTTAGAGG TGGTTTTAGT
  GTTTTGATTC GGATTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062442	MGP_WTSI_3_143870350	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	T	G	T	T	G	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213068047					SNP	T	T	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	T	G	T	T	G	T	T	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062442	MGP_WTSI_3_143870350	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143913147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13895	CpG island 13895	1426 bp distal
Rr398096	regulatory region 398096	1606 bp downstream
Rr586602	regulatory region 586602	1676 bp distal
Rr586603	regulatory region 586603	78 bp proximal
Tssr35972	transcription start site region 35972	1856 bp upstream
Tssr35973	transcription start site region 35973	1401 bp upstream