rs213047366 SNP Detail

Summary

• ID
  rs213047366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70005438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGAGTG TGGCGCGACT
  GCGGTGCCCG AAGTGGGAAG CCGGCCAGGA AAGGAAATGG CAAGGAAATG TCCTGAGAGC
  CGGGCGCGCA CGTGCGTGTG GTGGGAGAGG TCTGACACTG CGGGGGGTGG GGGGGACACG
  ACTCCGCGGG GGTCCAGGTA GGCCTCAACA GGGAAGCCTA GAAGGTTCGA TGGTGGGGTG
  R
  GAGGGTTGGG GGGGTGGAGT GAGAGGGGGG GTGGAGTGAG GGGGGGTGGG GGACCCGAAG
  GTGAGGTGGG TCAGGACTGG ATGGGGAGGT GGGCGGAACA CTCTAGACTG GGAGGATGTG
  AGGCGCCGCT CTGGTAGAAA AAGGTCCTGA CGGTAGATGA GAGGTCCTCA AAGATGGTGG
  GAAGAAAGTT CTGGCGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J
ss391453654	MGP_WTSI_14_70167796	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J
rs213047366					SNP	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391453654	MGP_WTSI_14_70167796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70005438 () rs orientation: forward

Symbol	Name	Function Class
4930480K23Rik	RIKEN cDNA 4930480K23 gene	876 bp downstream
Rr494753	regulatory region 494753	507 bp distal
Tnfrsf10b	tumor necrosis factor receptor superfamily, member 10b	Intron
Tssr126375	transcription start site region 126375	463 bp downstream
Tssr126376	transcription start site region 126376	436 bp downstream