rs213041374 SNP Detail

Summary

• ID
  rs213041374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145192373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTATTGA ACATTTTGAT
  GCAGTTGAGG AAATGCTGCA ATCATCCATA TCTCTTCGAT GGAGCTGAAC CTGGTCCACT
  GTTCACAACA GATATGCATC TAGTTACCAA CAGTGGCAAG ATGGTGGTGT TAGACAAGCT
  ACTCCCTAAA CTGAAAGAAC AAGGTTCAAG AGTACTAATC TTTAGTCAGA TGACAAGAGT
  M
  TTAGACATTT TGGAAGATTA TTGCATGTGG AGAAATTATG AGTACTGCAG GTTGGATGAA
  CAGACACCCC ATGAGAGACA AGACTCCATC AATGCATACA ATGAACCAAA TAGCACAAAG
  TTTGTATTTA TGCTAAGCAC ACGTGCTGGT GGTCTGGGCA TCAATCTTGC AACTGCTGAT
  GTAGTAATTT TATATGATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	RIIIS/J	SJL/J
ss363599294	MGP_WTSI_4_145055706	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	A	A	A	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	RIIIS/J	SJL/J
rs213041374					SNP	C	C	C	C	C	C	C	C	A	A	A	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599294	MGP_WTSI_4_145055706	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145192373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	1520 bp distal
Gm65281	predicted gene, 65281	316 bp downstream
Gm70672	predicted gene, 70672	1036 bp upstream
Rr377358	regulatory region 377358	1016 bp downstream
Rr604377	regulatory region 604377	1589 bp distal
Rr604378	regulatory region 604378	1402 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates