rs213016397 SNP Detail

Summary

• ID
  rs213016397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118432066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaaaaTTGC AGCAAGTATT CGTAATAGTC
  ACACTGTGCA CAAAAGGAAA CCGAGTCTCG GGTAGGTTAT TCTGTCCCAG TAATTCATTC
  ACTCGGGACC TGGCTTACCC GCTCGCCCCC CACATCCCAG CATCTAGCCC CAGCAGCCAG
  R
  GAACGGATGC GTCACCGCGT CACGCTCGCG CCATGCGTGA GTCAACTCCT CAGGGTTCCG
  CCCAACCACC CCGCATCTTC CCCGCCTAGT GGGCAAAATG CGCAGGCGTA GCACGAGCTA
  GAGGCCCTAG ATTAGCTCTG CAGAAGTGCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924499	CHEV_6_118405123	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213016397					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118432066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17902	CpG island 17902			within coordinates
Rr637480	regulatory region 637480			within coordinates
Rr637481	regulatory region 637481			188 bp proximal
Rr637482	regulatory region 637482			383 bp proximal
Tssr62661	transcription start site region 62661			370 bp downstream
Zfp248	zinc finger protein 248			Intron
				Noncoding-Transcript-Variant