rs212989392 SNP Detail

Summary

• ID
  rs212989392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173959567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG TGTGTGTCAA CGTGACCAGG
  R
  CAGATGGCAC CTAAGTATTG AGAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320627004	CHEV_2_173943275	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212989392					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173959567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Npepl1	aminopeptidase-like 1			Intron
				Noncoding-Transcript-Variant
Rr572073	regulatory region 572073			391 bp distal
Rr572074	regulatory region 572074			608 bp distal
Rr572075	regulatory region 572075			420 bp proximal
Rr572076	regulatory region 572076			568 bp proximal
Tssr788	transcription start site region 788			1794 bp downstream