rs212952403 SNP Detail

Summary

• ID
  rs212952403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115676783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTACCATT CATGTCTTAA
  CTTGTCAGTC AGAATGGTAC TTGTCTAACA TTCATGTCTT AATTTGCCAA CCAGGATGTC
  AGTTACCCAC GTACATATCT CTTTCTGACA AGTAGGATGT CAGTTCCCAG GGAACTTAAA
  CTTTACTCAA CCACTACTCA AAATGGAAGT CGTATTCCAA ATAGTTTCTT ATTGTTAATT
  R
  TCTCTTATGC TGGGGTCCAT CCCAGGGGCA GCTTATACCA TAAAAACTTA TACACAAGTG
  CAGGAAGTGC TGTTGGGTGG TTGATTTGGG TCCAAGCTCA TTGTGGGTAA CTATACAAAA
  CAGTTCTACT GGCTTCCATC ATCAGTGGTT TCCAAGGACG CAGGACATAA CAGAATATGC
  AATCAATCTC GGCATTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916404	CHEV_6_115649840	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212952403					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115676783 () rs orientation: forward

Symbol	Name	Function Class
Gm38879	predicted gene, 38879	1708 bp upstream
Rr379973	regulatory region 379973	653 bp downstream
Rr637027	regulatory region 637027	1429 bp distal
Rr637028	regulatory region 637028	829 bp distal
Rr637029	regulatory region 637029	918 bp distal
Rr637030	regulatory region 637030	684 bp distal
Rr637031	regulatory region 637031	1014 bp proximal
Rr637032	regulatory region 637032	1666 bp proximal