rs212945615 SNP Detail

Summary

• ID
  rs212945615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116762914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AAGTGCTAAG TCACTTGTTT GTTATCTCCC TCTGCTTGGC
  TTTAGGTAAT GGTGATGGCT CCTTTAGTAA CCGAAGAACC CTTAGAGTAG AATATTTGCA
  TCAAGCTCAG CTCCCCTCTC AAAGTCCCAC CGCAGGCAGC CTTCTGACAG AGACCTTAGA
  M
  TCTTAGGTCT TGGAAAGCAA AACAAAACAA AACAAAACAA AAAAACCCAA AGGTGTTAAC
  GTGATGATTG ATGTTGGATA TCTGGGGACT GCAGCACCTT TTTTGGACCC CATTCAAAAA
  AAACAAAAAA CAAAAAACAA AAAACAAAAC AAAACAAAAC AAAAAAACAA ACCCCGACAA
  TCTTCAATTT CAGGAAGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359366540	MGP_WTSI_3_116672183	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	A	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs212945615					SNP	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	A	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359366540	MGP_WTSI_3_116672183	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116762914 () rs orientation: forward

Symbol	Name	Function Class
4930455H04Rik	RIKEN cDNA 4930455H04 gene	Intron
Gm52613	predicted gene, 52613	1252 bp downstream
Palmd	palmdelphin	278 bp upstream
Rr583817	regulatory region 583817	988 bp distal
Rr583818	regulatory region 583818	within coordinates
Tssr35360	transcription start site region 35360	714 bp upstream
Tssr35361	transcription start site region 35361	697 bp upstream
Tssr35362	transcription start site region 35362	632 bp upstream
Tssr35363	transcription start site region 35363	573 bp upstream
Tssr35364	transcription start site region 35364	497 bp upstream
Tssr35365	transcription start site region 35365	476 bp upstream
Tssr35366	transcription start site region 35366	450 bp upstream
Tssr35367	transcription start site region 35367	431 bp upstream
Tssr35368	transcription start site region 35368	327 bp upstream
Tssr35369	transcription start site region 35369	261 bp upstream
Tssr35370	transcription start site region 35370	238 bp upstream
Tssr35371	transcription start site region 35371	249 bp downstream