rs212909946 SNP Detail

Summary

• ID
  rs212909946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105172921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGACTTCA GTGGTAGAGC
  ACTTGCTCAA AATGTGCAAG GCTCTGAGTT CAATCTGTAT TACTATAAGA AAGAAAAAGA
  AAAAATAGTC AGATGTTGAA GATATCTGTA AACACGTGAG ACGATGCAAT CTTTCTTAAG
  AATTTTTATG TAGTTTTTAA ATGTATAACT ATCATTTAGA TTGACATGTA ATAGATTAGT
  Y
  ATGTATAATT TAATTAATAT ATAATCTTTC TAAATTATAA TTTATAATAT AGTAAGCATT
  ACTAGATACG ACACATTCTT TGGAATAATC AGGCTTTGTT TCATTATGTT TTAAATTTAT
  TACATGCATG TACGTATGTA TGTTTGTATG CATGTATGTA CGTTCCTCAA AGCATGTGTG
  GAGGCCAGAA GACAAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243576	CHEV_4_104988329	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212909946					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105172921 () rs orientation: forward

Symbol	Name	Function Class
Gm40217	predicted gene, 40217	within coordinates
Rr596595	regulatory region 596595	286 bp distal
Rr596596	regulatory region 596596	861 bp proximal
Rr596597	regulatory region 596597	1335 bp proximal