rs212909408 SNP Detail

Summary

• ID
  rs212909408
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13839629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAATGGA TCAGGAGTAC
  AAAGATTTTA CATGGCTGTT CCTCGCATCC CACCCCAAGC AACAAGACTC TCCTTTCTCT
  TCCAAGCTGG GATGACCAAT AGGTTGCTGA TGTCAAAGCG GTGGAGTGTA TGAGTTTCCC
  CTTTCCCTTT TTTTGTTATT AGACATTTAA AAAATAATAA TACCAGGAAT ATGATGAATA
  S
  CGGAAACTTA CACCAGTCCA CAAACACCAC ATAGTCTGAC ACCTGGTGAT TAGGAACGCC
  CCAAGAATCA TCCACGTCTC GATTCTCCCA TTTCCAAAGA GTTTTTGCGA GGGTGGGGTA
  AGATTTTAAA CAACTACCCA CTCTTCACCC CTTAAAAGCT AGCAGGCACG CTTTCATTAA
  TTCCCAAGGT GAAACGTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367440164	MGP_WTSI_6_13789630	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212909408					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367440164	MGP_WTSI_6_13789630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13839629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17167	CpG island 17167			450 bp distal
Gpr85	G protein-coupled receptor 85			Intron
				mRNA-UTR
Rr626594	regulatory region 626594			1899 bp distal
Rr626595	regulatory region 626595			686 bp distal
Rr626596	regulatory region 626596			302 bp proximal
Tssr54956	transcription start site region 54956			929 bp downstream
Tssr54957	transcription start site region 54957			888 bp downstream
Tssr59842	transcription start site region 59842			1523 bp upstream
Tssr59843	transcription start site region 59843			1188 bp upstream
Tssr59844	transcription start site region 59844			1012 bp upstream
Tssr59845	transcription start site region 59845			941 bp upstream
Tssr59846	transcription start site region 59846			420 bp upstream
Tssr59847	transcription start site region 59847			290 bp upstream
Tssr59848	transcription start site region 59848			192 bp upstream
Tssr59849	transcription start site region 59849			120 bp upstream
Tssr59850	transcription start site region 59850			96 bp upstream
Tssr59851	transcription start site region 59851			265 bp downstream
Tssr59852	transcription start site region 59852			286 bp downstream