rs212901762 SNP Detail

Summary

• ID
  rs212901762
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52649683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATAACA AATTTCCTCT
  TCTCTCCAGC AACCATATCT GGATTCTTTT CTCTCATGAT GTTTAACACT CGGTTCAGCA
  ACTCCTCATA TGTGTAGTCT CTTTCTGAGC CTGCCCAAGC AGTTTGGCTA CTGAATGAAA
  TGCCATCATC TTTTTTGCTG TCTTCATCTT CTAAAGCTTC GTCTTTTTCT AGTATTTCAT
  M
  TTCTTCTGGG AATTTAACAT TCTTCTTTTT CTTTTTTTTG TTGCCAAGCA TAATGTCAAG
  GTAATCCTCT GGCTCGGCTG GCTCTTGAGC ATCACTCTCA ATCTTAACAT CCTTTATAGC
  TTCTTCAGCT TCATCAATGT CAAATATCTT TTTCGTCTTT TTCTTCTTTT TCTTTTGATT
  AAAGAAGTTC AAATCATCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss374682818	MGP_WTSI_8_53282002	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs212901762					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374682818	MGP_WTSI_8_53282002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52649683 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	within coordinates
Gm64848	predicted gene, 64848	352 bp downstream
Rr663484	regulatory region 663484	409 bp proximal
Tssr81291	transcription start site region 81291	218 bp downstream
Tssr81292	transcription start site region 81292	391 bp downstream
Tssr81293	transcription start site region 81293	486 bp downstream
Tssr81294	transcription start site region 81294	500 bp downstream