rs212897608 SNP Detail

Summary

• ID
  rs212897608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152055245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCCCCTAG CTGATTCTTT GCTTTTTATT
  CTGAAACTAG CCTCACTGTG GTATCTTTAC CTCcagaggg cagagggcag agggcagagg
  gcaggggcag agggcagggg cagagggcag agggcagagg gcaggggcag agCAGCAGAT
  Y
  GTGAACTCAC TTTGTAGCCT TGAATTTGTT ACtttttttc ctttcctttt tttttttttt
  tttttctttt tGGTTATTTT GATGGAGTCT CATAAAGGCA aggcagaaac ttgctgtgta
  gcccaggcta gcctggaact tgctgtgtag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028729	CHEV_3_152012572	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212897608					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152055245 () rs orientation: forward

Symbol	Name	Function Class
Rr587535	regulatory region 587535	1947 bp distal
Rr587536	regulatory region 587536	1000 bp proximal
Tssr32407	transcription start site region 32407	1034 bp downstream
Tssr32408	transcription start site region 32408	396 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron