rs212855875 SNP Detail

Summary

• ID
  rs212855875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104516447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAAACAT CCAAGTCCTG AGGTGACCCC
  ATTTTTATCC CCCACAAATC AGGAAATCAC CTATGCTGAT AGATGGGAGA ATCTTGAAGC
  AGAGCCTACG GCTATTCATC CTCATATCCA TAGCACAAAG GAGCCCCAAG AACTCCAAGA
  R
  CTCCAAggtg ggcacccctc cacccaccca caaatacact cagaaagctg agacaggagg
  attgctatga gtctaaagcc agcctgagat acaaagtgag gctgtctcag aacaaacaaa
  aACAATAACC AACTCAGGTA TGTAAATAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320445344	CHEV_2_104526259	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212855875					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104516447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12000	CpG island 12000	621 bp distal
Rr562107	regulatory region 562107	495 bp distal
Rr562108	regulatory region 562108	731 bp proximal
Rr562109	regulatory region 562109	1243 bp proximal
Tcp11l1	t-complex 11 like 1	Intron