rs212846995 SNP Detail

Summary

• ID
  rs212846995
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135707654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GTCTCGAAAA ACCAAAAAAA
  S
  AAAAAAAAAA AAAAAAAAAA AGGTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ
ss917096930	MGP_WTSI_4_135980343	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	G	G	C	C	C	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BUB/BnJ	C57BL/6J	C57BL/10SnJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ
rs212846995					SNP	C	G	G	G	C	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917096930	MGP_WTSI_4_135980343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135707654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69125	predicted gene, 69125			within coordinates
Pithd1	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr602230	regulatory region 602230			1193 bp proximal
Rr602231	regulatory region 602231			1504 bp proximal