rs212809254 SNP Detail

Summary

• ID
  rs212809254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109135650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAATC TACCCCCTCC
  CCAAGTACTA CACACACACA CACACACACA CACACACACA CAATAAAAAA GGCAGAATAA
  AAAAGTCATA TCAAAGTAAC TAAAAGCTGG TATGCAGACT TCCTAGACCT TCTGAAGTAG
  GCTACATACA AACTGAGTGT AGTTTTACAT CAACCTGACA CAAGTTAGAT TTATTAGACA
  Y
  GAGGAAACCT CAGTTGAGAT AAAGCCTCCA TAAGACCTCA CTGTAGGGCA TTTTCTTAAC
  TAGTAGTTGG TAGGAGAAGG CCCAAGCCTG GGTTCTATAA GAAAGCAAAC TGAGTAAGTC
  AGTAAGCAGC ACCCCACCAT GGCCTCTGCT TCAGACCCTG CCTCCAGGCT CCTGCCCTGT
  TTGAATTCCT TTCCTCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362799433	MGP_WTSI_4_108951058	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212809254					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362799433	MGP_WTSI_4_108951058	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109135650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14571	CpG island 14571	1484 bp proximal
Eps15	epidermal growth factor receptor pathway substrate 15	1815 bp upstream
Gm40225	predicted gene, 40225	within coordinates
Rr398389	regulatory region 398389	1556 bp upstream
Rr597299	regulatory region 597299	1184 bp proximal
Rr597300	regulatory region 597300	1679 bp proximal
Rr597301	regulatory region 597301	1970 bp proximal
Rr597302	regulatory region 597302	1992 bp proximal
Tssr38334	transcription start site region 38334	1813 bp upstream
Tssr38335	transcription start site region 38335	1863 bp upstream
Tssr38336	transcription start site region 38336	1912 bp upstream