rs212797525 SNP Detail

Summary

• ID
  rs212797525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95495027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGAAGG TGTGCCTTCT
  GTACCTCTGA AAATTATTTT GTAGTTCATA GTTATTAAAC TAATAAAAGT TTTAGCTATT
  ATATTGTGTT TACCTGAGAT AAATCCAAGG GAACTTTTGA CTAAACAAAA ATACAAATGT
  CATTGATTCT GCTCATATCC ACTGAATACA ACCTGCCTTC TATTTTAAAG AAAGCTTTTT
  Y
  TTTAAATGTG TTAAGTTTTA AGGCCCTCTA AAACCATTTT TGAAGTGTTT ATTCTGACTT
  TAAAATTCTG TAAGGATACA CTTTTTACTT ATGTTAAAAC TGTACCATTT ACTTGGTGCT
  ATTAAAACAA TGTTTGCTAT TTTGATATAG TGTGTTATTA ACAACTTTTT TTTTTTAATA
  TTTATTTATT TATTATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358904025	MGP_WTSI_3_95391638	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212797525					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358904025	MGP_WTSI_3_95391638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95495027 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	1255 bp upstream
Golph3l	golgi phosphoprotein 3-like	1253 bp upstream
Hormad1	HORMA domain containing 1	mRNA-UTR
Rr397841	regulatory region 397841	877 bp upstream
Rr580975	regulatory region 580975	225 bp proximal
Rr580976	regulatory region 580976	543 bp proximal
Rr580977	regulatory region 580977	1086 bp proximal
Rr580978	regulatory region 580978	1092 bp proximal
Rr580979	regulatory region 580979	1285 bp proximal
Tssr30603	transcription start site region 30603	1212 bp upstream
Tssr30604	transcription start site region 30604	1244 bp upstream
Tssr30605	transcription start site region 30605	1275 bp upstream
Tssr30606	transcription start site region 30606	1319 bp upstream