rs212795843 SNP Detail

Summary

• ID
  rs212795843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51317243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT AAGTAAATCT TTAAAAAAAA
  W
  TTTTATAGAT GTTAGATGAC AGTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762667	CHEV_3_51213744	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212795843					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51317243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13138	CpG island 13138	732 bp distal
Ndufc1	NADH:ubiquinone oxidoreductase subunit C1	Intron
Rr374943	regulatory region 374943	52 bp downstream
Rr576310	regulatory region 576310	880 bp distal
Rr576311	regulatory region 576311	344 bp distal
Rr576312	regulatory region 576312	796 bp distal
Rr576313	regulatory region 576313	773 bp distal
Tssr33211	transcription start site region 33211	838 bp upstream