rs212775817 SNP Detail

Summary

• ID
  rs212775817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113601349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCGCGCGA GCCCTCTCAG GTCATCTTCT
  GCAACCGCAG CCCGCGCGTC GTGCTGCCTT TGTGGCTCAA CTTCGACGGC GAGCCTCAGC
  CCTACCCGAT CTTACCACCG GGCACCGGCC GCCGCATCCA CAGCTACCGA GGTACGAGCC
  R
  CGCGCTAGGC CGCTGCTGCT GTAACAGGCG GGGCGCTTTC TCTCCGACCC CGAGCATCTT
  GTCCCTACCC ACTGCATCTA CCCCGAGAAA ATGCCCGGCC CCTACCAGTG ATTTCGGATG
  CAGTGTTAAC CCAGTTCCCG GTCAGGTTCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911160	CHEV_6_113574382	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212775817					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113601349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	within coordinates
Gm66537	predicted gene, 66537	1404 bp downstream
Rr636555	regulatory region 636555	419 bp distal
Tssr58233	transcription start site region 58233	351 bp downstream
Tssr58234	transcription start site region 58234	326 bp downstream
Tssr58235	transcription start site region 58235	224 bp downstream
Tssr58236	transcription start site region 58236	279 bp upstream
Tssr62461	transcription start site region 62461	856 bp upstream
Vhl	von Hippel-Lindau tumor suppressor	Intron