rs212701043 SNP Detail

Summary

• ID
  rs212701043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101350665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTCTCT TCTCCTCTCC
  TCTCCTCTCC TCGCCTCTCC TCTCCTCGCC TCGCCTCGCC TCGCCTCGCC TCGCCTCGCC
  TCGCCTCGCC TCTCCCCTCC CCTCGCCTCT CCCCTCCCCT CGCCTCGCCC CTCCCCTCCC
  CTCCCCTCCC CTCCTCTTCC CTCCCCTCCT CTCCTCCCCT CCCCTCCTTT CCTTTCTTTT
  Y
  CTTTCCTTTC TTTTCTTCTT CTTTCTCTCT CTCCCCCCCT CTTTTCTCTA AGTTTGTCTT
  ATTGTATTTT CAGTGCCCAG TTTTGAGCTA TGAAAAGAGA TTCTTGTCCC TAAGCCTCTG
  AATGTGCCTC AGGGCATTTG AATTGTTTTC CAGCTCAGGC TGAGCCCTCT TCTCATGGGC
  TTCCAGGGTT TGTTGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	RF/J	RIIIS/J	SJL/J	ST/bJ
ss362615887	MGP_WTSI_4_101166073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	C	T	C	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	RF/J	RIIIS/J	SJL/J	ST/bJ
rs212701043					SNP	C	T	T	T	T	T	C	T	C	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362615887	MGP_WTSI_4_101166073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101350665 () rs orientation: forward

Symbol	Name	Function Class
D4Mit176	DNA segment, Chr 4, Massachusetts Institute of Technology 176	1328 bp distal
D4Mit176.3	DNA segment, Chr 4, Massachusetts Institute of Technology 176.3	1159 bp distal
Rr596165	regulatory region 596165	299 bp proximal