rs212689422 SNP Detail

Summary

• ID
  rs212689422
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131791248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAAGAG AGCACTGGCC
  CTCCGCGCAG CGCATCACTG CTTCGCTGGC AGGGCTTAGT GGCCCCGTGT GAACCAAGGG
  ACAACTCCTA ACCGCACCAG TGGGAGTGCG CTTGCTGGGA CCTCCGCTCG CCTCAGCTCT
  CCAGAGTCCG GTGGAGGGGT TGGGGGAGAC TCTGATCACC AGTCACAAAC CCCGCGGACC
  W
  GGAAAAGAGG GACTTGAGTG GTGCAAAGGT TGAGAGCTAA AGCACAGGAG AGGACAGAGG
  AGCAGAGGAG CCGGGGGAAA CAAGAGAAAA GAAAGGAAGA AAAAGAAAAA GAAGCAGCAG
  CTGGGGAGAA CCCTGTGCGC GGTTAAGGGA GGATTCCATC ACCGCGGAAA ATCGTGCAAA
  AGCGCAAAGG TGCTGAACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359754926	MGP_WTSI_3_131748451	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212689422					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359754926	MGP_WTSI_3_131748451	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131791248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13841	CpG island 13841	within coordinates
Cpgi13842	CpG island 13842	1479 bp proximal
Dkk2	dickkopf WNT signaling pathway inhibitor 2	mRNA-UTR
Rr585410	regulatory region 585410	1427 bp distal
Rr585411	regulatory region 585411	1241 bp distal
Rr585412	regulatory region 585412	185 bp distal
Rr585413	regulatory region 585413	within coordinates
Rr585414	regulatory region 585414	1693 bp proximal
Rr585415	regulatory region 585415	1959 bp proximal
Tssr31747	transcription start site region 31747	188 bp downstream
Tssr31748	transcription start site region 31748	32 bp downstream
Tssr31749	transcription start site region 31749	292 bp upstream