rs212668489 SNP Detail

Summary

• ID
  rs212668489
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141233090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGAGGTA AAGAGCCTAG
  ACTGCTTTTC AATAGGACCC GGGTTCAAGA CCCATCATGG CAGCTCTCAA GTGTAACTCC
  AAGATCTGAC ACCCTCACAC ACAGACATGC ATGCAAGCAA AACACTAATT CACACAAAGT
  AAAAATAAAT TATTTTTTAA AAGAGAGAAA AAATGGCAAG GAGTTACTAA ATAAAAAGCC
  S
  AGAGCCAGGG CTCTCACTCC TATAGGCCGA CGCTCAGGAG TGAGGATGCT GTCATAAGTC
  CTCAGAATTT CTAGAACCTC CAGAAAGTGG AAGCCAGCCC GGGCTACTTG AGAAACTTGT
  ATAAAAACAG AACAAAGGAG ACAGGGCAGC ACCTTTAATC CCAGCACCTG GAGGGAGAGA
  AAGGTGCGCC TCTGAGTTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387732	CHEV_4_141061694	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212668489					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141233090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603780	regulatory region 603780			982 bp distal
Rr603781	regulatory region 603781			153 bp proximal
Rr603782	regulatory region 603782			1331 bp proximal
Rr603783	regulatory region 603783			1604 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant