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rs212660553 SNP Detail
Summary
  • ID
    rs212660553
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr4:135681422 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACCCAGTCC TGACTCCAAA
    CATGAAAGGC TTTGAGGAAG CGGTAAGAGG TTGACTGGCG AGGCCCCTGA GAGAGACTGA
    TGGTTACCAG TCCCTGCCTT GTCCTGGGAT GTCCCTCTGA ACAGCCTGCC ACCAGTGGGG
    CTGAATACCA TCAGACTGGG GCTGGGGGTG GGGCTGGAGG GTTTGGGGGA GGGGGGAGTT
    S
    AGCCCTGTCA CTCACTCCTC TGTTGTCTTG ATGAATTGCT TAACCTCAGT CAGTTCTGCC
    TCTGAGCCAC GAACGATAGC AGCACTTTAC CACTAAGTGG ATGCTCCCAT AATCAATGTT
    TAGTAATAGC TGAGAGACAA GGCCTGATAA AAAAAAAAAC ACCAAGGCCT GGGATCACCC
    ACTTTGGTTT TGTTGTTGTT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363379346 MGP_WTSI_4_135510026 EVA_MGPV3 EVA_MGPV3 f SNP G G C C G C C C C C C C G G C C C C C C C G C C C G G C C G C C C C C G C C C C C C C G C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212660553 SNP G G C C G C C C C C C C G G C C C C C C C G C C C G G C C G C C C C C G C C C C C C C G C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363379346 MGP_WTSI_4_135510026 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135681422 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmgcl 3-hydroxy-3-methylglutaryl-Coenzyme A lyase Intron
Noncoding-Transcript-Variant
Rr398602 regulatory region 398602 192 bp upstream
Rr602217 regulatory region 602217 491 bp distal
Rr602218 regulatory region 602218 227 bp proximal
Rr602219 regulatory region 602219 328 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory