rs212631804 SNP Detail

Summary

• ID
  rs212631804
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128138575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCCGAC CCCAGTATCT
  GACCCATCAG CTGCTTTGAT CTGCTGAAGT TTCTTTCTTC TACTTCCCAC AGACTTTTAT
  GATTTTATTA CATGTGTGTT TGCTCTGTTC TGTGACAATT GAGGTGAATG AATCAGAATC
  ACCAATTGTT TTTCCTTCTA GTCTGCCCAG GTCTGTCACC CCATCCTGCT CTGACCATTT
  W
  TTTTTTTTTT TTTTAAGATT TATTTATTTA TTATATGTAA GTACACTGTA GCTGTCTTCA
  GACACTCCAG AAGAGGGCGT GAGATCTCAT TACGGATGGT TGTGAGCCAC CATGTGGTTG
  CTGGGATTTG AACTCAGGAC CTTCGGAAGA GCATTCAGTG CTCTTAACCG CTGAGCCATC
  TCTCCAGGCC CCTGCTCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320502032	CHEV_2_128122391	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212631804					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128138575 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	1168 bp downstream
Rr564694	regulatory region 564694	1021 bp distal
Rr564695	regulatory region 564695	1477 bp distal
Rr564696	regulatory region 564696	610 bp distal
Rr564697	regulatory region 564697	199 bp proximal
Rr564698	regulatory region 564698	1229 bp proximal
Tssr26154	transcription start site region 26154	1647 bp upstream
Tssr26155	transcription start site region 26155	1611 bp upstream