rs212621257 SNP Detail

Summary

• ID
  rs212621257
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132291209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGGTAT ATGCGCTGGT
  GTGTTCATTC ACACAAGCTC TTGGGCAGTC TCCGGTGCAG ACTGCTCTCT GTCTGTCATC
  CATCCTTTCC CTTGTCCCTC CCTGAATCTC CTCTCTGTAT TCTCTCATTC CTCCCATGCG
  CTCCTGTTTA CATCAGCCGT TCTCCCTCCC TCTACCCCTC TCGCCTTCTC CCCTCCTTTC
  C
  GACTCTCTTT CCCTCTCCTC GTGCCAACTG TTTGTTGCTT CTTTTGGTTC TCTCTGTGTG
  TCTCTCTGTG TCTCTGTGTG TCTCCCTCTC CTCCCCCACC CCGCCCCTTT CCACACCCCC
  TGTCTGACAC CCTCTCTGTC CTTTGCTTGC TCTGCAGGAA ACCTCTGCAG TACTGAGTCT
  GGCTGGCTCA GTCCGTGTGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334502	CHEV_4_132119813	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212621257					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132291209 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	169 bp upstream
Rr601015	regulatory region 601015	within coordinates
Rr601016	regulatory region 601016	180 bp proximal
Rr601017	regulatory region 601017	206 bp proximal
Rr601018	regulatory region 601018	361 bp proximal
Rr601019	regulatory region 601019	1593 bp proximal
Tssr39381	transcription start site region 39381	417 bp downstream
Tssr39382	transcription start site region 39382	388 bp downstream
Tssr39383	transcription start site region 39383	305 bp downstream
Tssr39384	transcription start site region 39384	270 bp downstream
Tssr39385	transcription start site region 39385	161 bp downstream
Tssr39386	transcription start site region 39386	153 bp upstream
Tssr39387	transcription start site region 39387	184 bp upstream
Tssr39388	transcription start site region 39388	285 bp upstream
Tssr39389	transcription start site region 39389	1462 bp upstream