rs212589716 SNP Detail

Summary

• ID
  rs212589716
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:105738137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAAACG TCTGAATAAA
  TTTTTTTTGC TCAGAATTTT CTTCTGGGTT AAAAAAAAAA ATCTGACCCT TAAGAAAAGT
  TTGCTCCGAT TCATCCTATA ATTCTGTTGA TAATGATGGC ATGGAGGAGA GAATACTGCG
  TTTACCCTAA GGTAAATATC ATTTGTGTGT TTTCTTTGAT CCCAAATCTG GAACCTCGGT
  W
  GCCCTTTACG TCCTGATAGG TTTGCTCTGA GCTATATATT GTTCCTTTAA TGTATCAACA
  ACTAGGGAGC TACTGCGTCT CAAATTGAAC TTTATATTTC AGAGAATCAA ACACGTTTGG
  CAAGCGTTTG CTTTTTATTT ATTTATTTAT TTATTTATTT ATTTATTTAT TTATTTTTTA
  AGTGTGGGTT TTCAAACCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392354459	MGP_WTSI_14_105899920	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	T	T	A	T	A	T	A	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212589716					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	T	T	A	T	A	T	A	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392354459	MGP_WTSI_14_105899920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:105738137 () rs orientation: forward

Symbol	Name	Function Class
4930449E01Rik	RIKEN cDNA 4930449E01 gene	within coordinates
Gm62338	predicted gene, 62338	955 bp upstream
Gm62353	predicted gene, 62353	1665 bp downstream
Rr497222	regulatory region 497222	1908 bp distal
Rr497223	regulatory region 497223	1769 bp distal
Rr497224	regulatory region 497224	1162 bp distal
Rr497225	regulatory region 497225	853 bp distal
Rr497226	regulatory region 497226	473 bp distal
Rr497227	regulatory region 497227	575 bp proximal
Rr497228	regulatory region 497228	1378 bp proximal
Tssr127089	transcription start site region 127089	850 bp downstream
Tssr127090	transcription start site region 127090	657 bp downstream