rs212588228 SNP Detail

Summary

• ID
  rs212588228
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114355997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGATTCT AGCTCAGGCT
  CTGTCACTGT CCACCAAGTC CTGTTTATAC ACTCTCCAAA CATCACGTGC CTTGCCTCAG
  CATGTGTACC TGTCTCAGCT GGCCTCACTC TGCCAATCAG CCCAAGTCTG TAGAAGCCAC
  AAGAAACTGC AGCACACCAT CAGAACTTTT TTTGTTTGAT TGTTTTGTTT TGTTCGTGTG
  K
  GTGCATTTCT CTCTATGGGA TTTCAACAGG TATAGTTCAA CTGTAAGACA GATCGTTACA
  TGGGTATTGT TAGCAAAGAA TCCTCATCAC ATGTCCTTTC ATGTGCTTGC TTTAGCAGAC
  ATCCTTTCTC CTGTGTCTGA TTCAGCTAAA CATTTCTTCA TGAGTCTGCC TTAGTCTTTC
  ACCTGTATCC ACTTCAGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321274313	CHEV_4_114171405	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212588228					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114355997 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597586	regulatory region 597586			933 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant