rs212565000 SNP Detail

Summary

• ID
  rs212565000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129994809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGCATCGAC CCTTGGAAAT GGTGCCTTCC
  TTCATTTCCC TCCTCGGTCA AATCCATGCT GCCCTCTGGG GGATTCTATG ACAGGCTAGG
  TTGAAGCTTT CAAGATTTGA GTGGCTGTCT CCCTGGAATT TGAAATGGCT GTATTTTCTT
  R
  GACCATGAAG AACCAGATGG GAAGCTGAGT TTTATAGTCT CTTCTTCTGT GGTCAGCAGA
  AAAAAAAAAT CTGTGCCTCT TGCTAGTCAG CTAGGGAGCT GGGGGAACTG CAGGGAAGAG
  GAGGGGGGTA CAGCCACGAT CCACAGGCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317061	CHEV_4_129778260	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212565000					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129994809 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1739 bp downstream
Rr600438	regulatory region 600438	83 bp proximal
Rr600439	regulatory region 600439	1052 bp proximal
Rr600440	regulatory region 600440	1553 bp proximal