rs212504375 SNP Detail

Summary

• ID
  rs212504375
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115810380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACCCCAAG AAAAGAATCC AACAGCAGTA
  CTGCTTCTGG TGACCATTGA GAAATAGAGT CTTAGAAAAT TCAGATCTCC CTTTCTGTCT
  CAATATATCC ATGTATTTGT AACTCACAGT TCCTTTACTG TGTACTGTTT TCTTTCTCCC
  W
  TTACCTTATG TCCTCATTTT TTAAAAATTA CAATAATGAT CGCCCAGAAA Ccacttcact
  cagaagttta aacatcctcc caccataact cagtaatccc actgtccagc attcacccac
  gagaaatgat aacaaatgtc tgcataaaca                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320893962	CHEV_3_115719649	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212504375					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115810380 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl2	exostosin-like glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr583640	regulatory region 583640			129 bp distal