rs212494357 SNP Detail

Summary

• ID
  rs212494357
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104960360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCGGAG ACCCGGCTCC
  CCCGGCACCG CAGAGCCCCG AGCCCACGCT CCGTACCTGG CCTCGGCGCT CCGGGATCCT
  TCCCCGCCGC CGCCTCCGCC GCCCGCTCCC CATCCCCAGC CTCCCAGGAC CCGCCCCTTA
  CCCGCCGGCG GCAGTGACAG GCAGATACCC TCGCCAATCA TAGCTTTACC CTTGCGGCTC
  W
  GAAACCAATC CTCGCCGCCT GAAGGCGGGG CTTCTCCAAA GTCATCCCGG CTCCTCCTGG
  GGCCGCAAGA TCCCTTTTGT TTGGGAGAGC CAGGCTGGGA TTGAGCTGGC GTCACTTCCG
  GGAGGAAGTA CCCTCCTCTG GTCCGCTGGA GTCTGTGCTC GCTCTGGTCT CCGCCCGGGT
  TCTGCAACTT TTCAGGACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359101371	MGP_WTSI_3_104855962	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212494357					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359101371	MGP_WTSI_3_104855962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104960360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	within coordinates
Cttnbp2nl	CTTNBP2 N-terminal like	mRNA-UTR
Rr367520	regulatory region 367520	within coordinates
Rr582659	regulatory region 582659	104 bp distal
Rr582660	regulatory region 582660	within coordinates
Rr582661	regulatory region 582661	1496 bp proximal
Tssr34913	transcription start site region 34913	470 bp upstream
Tssr34914	transcription start site region 34914	327 bp upstream
Tssr34915	transcription start site region 34915	106 bp upstream
Tssr34916	transcription start site region 34916	57 bp upstream
Tssr34917	transcription start site region 34917	81 bp downstream
Tssr34918	transcription start site region 34918	1832 bp downstream