rs212488198 SNP Detail

Summary

• ID
  rs212488198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115980298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCTCCCTCCC TCCCTCCCTC
  Y
  CTCTCTCTCT CTCTCTCTTT CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	KK/HlJ	LG/J	MA/MyJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J
ss641183639	FVB_NJ_6_115953355	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	KK/HlJ	LG/J	MA/MyJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J
rs212488198					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641183639	FVB_NJ_6_115953355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115980298 () rs orientation: forward

Symbol	Name	Function Class
Gm53336	predicted gene, 53336	within coordinates
Rr637126	regulatory region 637126	1263 bp distal
Rr637127	regulatory region 637127	514 bp distal
Rr637128	regulatory region 637128	174 bp proximal
Rr637129	regulatory region 637129	702 bp proximal
Rr637130	regulatory region 637130	1621 bp proximal