rs212435686 SNP Detail

Summary

• ID
  rs212435686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156147653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAGGCAG CTGGCAGAGC
  ATGAGATGGA GCCCTGCACA GAAGTACCTA TAGATGCTCC TCTAGCTTTT GGTCCCAGAT
  GGAAATGATC TGAAGTCGAG CTTTGGTCCG TTCTGGCCTA GGCCCTTTAC AGAAGTTACG
  CTGAGTGTCT GACAACCCTG TTTGTGAGTG TTCTCAGGGA TTAAAGTTGT CTTTAAACAA
  Y
  CTGGACTGGC TCTCCACCGG CTTCTTCCTC CTGCAGCTAC CACCCATTGT TCCCCTATCC
  TCATTGATTT CTAAATAGAA TAAAGTGGCC AGAGCTGTCT GCGTCTATGC TCGCCAACTG
  GTCTAGAGAA GGCAAGGTTG CCATAACTCA TCATAGGGTT TTGAGCAAAA TGATCCATCA
  CCTCAGGATA CCCCACTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445027	CHEV_4_155437305	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212435686					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156147653 () rs orientation: forward

Symbol	Name	Function Class
Gm52714	predicted gene, 52714	1078 bp upstream
Rr377474	regulatory region 377474	692 bp upstream
Rr606657	regulatory region 606657	676 bp proximal
Rr606658	regulatory region 606658	1161 bp proximal
Tssr40789	transcription start site region 40789	1143 bp upstream