rs212415838 SNP Detail

Summary

• ID
  rs212415838
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109247131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCTGTT TATAAAATCA
  ATAAGATCCA CAATCGAAAA TTTGAGCTAC AAATATCTAA TGAAACAGCA GCAGCAGCAG
  CAGCAGCAGC AGCAGCAGCA GCAACAACAG ATATAAAATC CCACCAAACT AGATTTCAAT
  TAAAAAAAAA AAAAGACTAG CGAAGAGGGC ATTTACAGGG AGTTGTCAGA GTTCAGTGAA
  G
  TAATATATTA CTACAAAAAG CTTATACACC CTTTTCGGCT TTGTAGGGCA GTGGGAATAA
  AAAAGACAGG GAGAACCTTG CCTCAGTATG ACAGAGTTGA CATGTGTGGG TGTGTGTGGG
  GGGGAACTTT CCAATTTTCC CCAGGGTTCT CCAAATATGC TGACCCAGTC TCTCAGTGTC
  TCGGTACTGA AGCGATTTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320868529	CHEV_3_109142733	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212415838					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109247131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13716	CpG island 13716	313 bp proximal
Rr367533	regulatory region 367533	1960 bp upstream
Rr583407	regulatory region 583407	348 bp proximal
Tssr31282	transcription start site region 31282	524 bp upstream
Tssr31283	transcription start site region 31283	649 bp upstream
Tssr31284	transcription start site region 31284	812 bp upstream
Tssr31285	transcription start site region 31285	847 bp upstream
Tssr31286	transcription start site region 31286	856 bp upstream
Tssr31287	transcription start site region 31287	888 bp upstream
Tssr31288	transcription start site region 31288	916 bp upstream
Tssr31289	transcription start site region 31289	939 bp upstream
Tssr31290	transcription start site region 31290	978 bp upstream
Vav3	vav 3 oncogene	838 bp upstream