rs212400821 SNP Detail

Summary

• ID
  rs212400821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:65141668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC TGGTGCTGAT AACAGAACTC
  R
  AGGCTGCATG CCTGCTAGAC AAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319746482	CHEV_1_65149083	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212400821					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65141668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	439 bp proximal
Cryga	crystallin, gamma A	Intron
Gm28845	predicted gene 28845	Intron
Tssr102	transcription start site region 102	1857 bp downstream
Tssr7113	transcription start site region 7113	1993 bp downstream
Tssr7114	transcription start site region 7114	1979 bp downstream
Tssr7115	transcription start site region 7115	1967 bp downstream
Tssr7116	transcription start site region 7116	1905 bp downstream
Tssr7117	transcription start site region 7117	1866 bp downstream
Tssr7118	transcription start site region 7118	1813 bp downstream
Tssr7119	transcription start site region 7119	537 bp upstream
Tssr11970	transcription start site region 11970	1871 bp upstream
Tssr11971	transcription start site region 11971	1847 bp upstream
Tssr11972	transcription start site region 11972	1826 bp upstream
Tssr11973	transcription start site region 11973	498 bp downstream
Tssr11974	transcription start site region 11974	573 bp downstream
Tssr11975	transcription start site region 11975	640 bp downstream
Tssr11976	transcription start site region 11976	854 bp downstream